Cloud-COPASI is a web-based tool for running computationally intensive simulation and analysis tasks in parallel on a high-throughput computing pool. Cloud-COPASI can connect to existing computing pools, or provides a simple interface for launching a new computing pool using the Amazon Elastic Compute Cloud (EC2).
Integration of additional features in GeneTech software tool including the support of SBOL export with DNA basepair generation; drag-drop functionality for creating genetic circuits using logic gates. The entire GeneTech was also transformed into Python.
GeneTech (extracted from Genetic Technology mapping) is a tool which allows a user to generate genetic logic circuits only by specifying the logical function desired to be achieved in a living cell. It does not require a user (either biologist or a computer scientist) to learn any programming language.
A user-friendly software tool named DVASim (Dynamic Virtual Analyzer and Simulator) is introduced, which provides a virtual laboratory environment to simulate and analyze the behavior of genetic logic circuit models represented in an SBML (Systems Biology Markup Language).
In this research, a complete automated experimental setup for the measurement of on-chip delay variations through dynamic partial reconfiguration was developed. The experiment was performed on two same Virtex-5 (XC5VLX110T) devices on the basis of which intra-die and inter-die speed comparisons were made.